Tags: docker

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  1. GDR MADICS ReproVirtuFlow: e-Science presentation for reproducibility with Galaxy & Docker

    16 Mar 2016 | Documents | Contributor(s): Anthony Bretaudeau

    Presentation made for the first meeeting of the ReproVirtuFlow working group from MADICS GDR

    https://cesgo.genouest.org/resources/317

  2. Remote Hackathon IUC Galaxy RADseq: Introduction to Docker

    06 Mar 2016 | Documents | Contributor(s): Cyril Monjeaud

    https://cesgo.genouest.org/resources/287

  3. SMALL CHANGE BIOINFORMATICS: NOTES: BIO IN DOCKER SYMPOSIUM 2015 DAY 1: NGS PIPELINES, WORKFLOW TOOLS, VOLUME MANAGEMENT

    04 Dec 2015 | Downloads | Contributor(s): yvan le bras

    https://cesgo.genouest.org/resources/217

  4. NGSeasy: A Dockerized NGS pipeline and tool-box

    04 Dec 2015 | Downloads | Contributor(s): yvan le bras

    Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

    https://cesgo.genouest.org/resources/215

  5. Flocker, a data volume manager for Docker

    04 Dec 2015 | Downloads | Contributor(s): yvan le bras

    Flocker is an open-source Container Data Volume Manager for your Dockerized applications

    https://cesgo.genouest.org/resources/213

  6. Galaxy IFB Hackathon 2015: Docker-based Galaxy tool development

    19 Nov 2015 | Tutorials | Contributor(s): yvan le bras, Cyril Monjeaud, Alban Lermine, Vivien Deshaies, Jocelyn Brayet

    Tutorial to reproduce the development processes of the Galaxy IFB dev hackathon

    https://cesgo.genouest.org/resources/183

  7. IPython & RStudio on Galaxy

    09 Sep 2015 | Tutorials | Contributor(s): yvan le bras

    Short video showing the use of IPython and RStudio on Galaxy through Interactive Environments

    https://cesgo.genouest.org/resources/146

  8. Beyond Galaxy: portable workflows and tool definitions with the CWL

    16 Jul 2015 | Presentation Slides | Contributor(s): Peter Amstutz, Nebojša Tijanić, Stian Soiland-Reyes, John Kern, Luka Stojanovic, Tim Pierce, John Chilton, Maxim Mikheev, Samuel Lampa, Hervé Ménager, Scott Frazer, Venkat S. Malladi, Michael R. Crusoe

    With Galaxy one gets all the benefits of bioinformatics workflow platforms: provenance tracking, execution and data management, repeatability, and an environment for data exploration and...

    https://cesgo.genouest.org/resources/129

  9. Docker compose

    29 Jun 2015 | Tutorials | Contributor(s): yvan le bras

    Overview of Docker Compose Compose is a tool for defining and running multi-container applications with Docker. With Compose, you define a multi-container application in a single file, then spin...

    https://cesgo.genouest.org/resources/111

  10. Galaxy Workbench for Metagenomics

    11 Jun 2015 | Galaxy tools | Contributor(s): Björn Grüning

    Galaxy Docker repository for metagenomics (Galaxy metagenomics flavour)

    https://cesgo.genouest.org/resources/62