Tags: NGS

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  1. A fast and accurate method for detection of IBD shared haplotypes in genome-wide SNP data

    12 Mar 2016 | Documents | Contributor(s): Douglas W. Bjelland, Uday Lingala, Piyush Patel, Matt Jones, Matthew C. Keller

    Identical by descent (IBD) segments are used to understand a number of fundamental issues in genetics. IBD segments are typically detected using long stretches of identical alleles between...

    https://cesgo.genouest.org/resources/308

  2. On assembly uncertainty (inspired by the 2013 Assemblathon2 debate)

    01 Feb 2016 | Documents | Contributor(s): Lex Nederbragt

    Assembly uncertainty by Lex Nederbragt

    https://cesgo.genouest.org/resources/246

  3. Metagenomics Remote Hackathon

    Link towards the initial GitHub page IUC Contribution Fest – Metagenomics Tools and Workflows IUC code fest summary Galaxy Metagenomics Remote Hackathon 2015 Metagenomics Galaxy Hackathon...

    https://cesgo.genouest.org/groups/guggo/wiki/MEtagenomicsHackathon

  4. iMetAMOS

    25 Jan 2016 | Documents | Contributor(s): yvan le bras

    iMetAMOS is an automated ensemble assembly pipeline; iMetAMOS encapsulates the process of running, validating, and selecting a single assembly from multiple assemblies. iMetAMOS packages several...

    https://cesgo.genouest.org/resources/232

  5. SMALL CHANGE BIOINFORMATICS: NOTES: BIO IN DOCKER SYMPOSIUM 2015 DAY 1: NGS PIPELINES, WORKFLOW TOOLS, VOLUME MANAGEMENT

    04 Dec 2015 | Downloads | Contributor(s): yvan le bras

    https://cesgo.genouest.org/resources/217

  6. NGSeasy: A Dockerized NGS pipeline and tool-box

    04 Dec 2015 | Downloads | Contributor(s): yvan le bras

    Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

    https://cesgo.genouest.org/resources/215

  7. Colib'read on Galaxy: A tools suite dedicated to biological information extraction from raw NGS reads

    24 Nov 2015 | Presentation Slides | Contributor(s): yvan le bras, Cyril Monjeaud, Olivier Collin

    Colib'read Galaxy toolssuite presentation made during the Galaxy day 2015

    https://cesgo.genouest.org/resources/187

  8. Renaud Jullien

    https://cesgo.genouest.org/members/1103

  9. Tutorial : Introduction aux NGS

    07 Jun 2015 | Tutorials | Contributor(s): yvan le bras, Cyril Monjeaud

    Document utilisé lors des formations pour introduire les NGS

    https://cesgo.genouest.org/resources/45

  10. Analyse de données RADseq sous Galaxy : l'exemple de STACKS

    07 Jun 2015 | Tutorials | Contributor(s): yvan le bras, Cyril Monjeaud, Anthony Bretaudeau

    Support de la formation RADseq sous Galaxy dispensée sur la plateforme bioinformatique rennaise GenOuest. Lien vers le formulaire d'inscription. Présentation Cette formation initie...

    https://cesgo.genouest.org/resources/33